We assume our timeseries data are discrete observations from a diffusion
process $x$ following the Ito stochastic differential equation
$$dx(t)= \sigma(t) \ dW(t) + b(t) \ dt,$$
where $W$ is a Brownian motion on a filtered probability space. Let
$\sigma$ and $b$ be random processes, adapted to the Brownian filtration.
See the Reference for further mathematical details.
The integrated variance of the process over the time interval $[0,T]$ is defined as
$$\int_0^T \sigma^2(t) dt.$$
For any positive integer $n$, let ${\cal S}_{n}:=\{ 0=t_{0}\leq \cdots
\leq t_{n}=T \}$ be the observation times. Moreover, let $\delta_i(x):=
x(t_{i+1})-x(t_i)$ be the increments of $x$.
The Fejer-Fourier estimator of the integrated variance over $[0,T]$, is
defined as
$$\widehat\sigma^{2}_{n,N}:= {T^2 \over {N+1}}\sum_{|s|\leq N} \left( 1-
{{|s|}\over {N}} \right)c_s(dx_n) c_{-s}(dx_n),$$
where for any integer $k$, $|k|\leq N$, the discretized Fourier
coefficients of the increments are
$$c_k(dx_{n}):= {1\over {T}} \sum_{i=0}^{n-1} e^{-{\rm i} {{2\pi}\over {T}}
kt_i}\delta_i(x).$$
The cutting frequency $N$ is a scalar integer. If not specified, $N$ is
set equal to $n/2$ (Nyquist frequency).