mFNChygepdf returns Fisher multivariate noncentral hypergeometric probability density function
This function calls function CMultiFisherNCHypergeometricpdf which is a translation into MATLAB of the corresponding C++ function of Fog (2008).
The notation which is used in mFNChygepdf and the order of the arguments is the one of MATLAB hyge. The notation which is used inside CMultiFisherNCHypergeometricpdf is the original one of Fog.
To illustrate the meaning of Wallenius and Fisher' function parameters, let's use the classical biased urn example, with $K$ red balls and $MK$ white balls, totalling $M$ balls. $n$ balls are drawn at random from the urn without replacement. Each red ball has the weight $\omega_{1}$, and each white ball has the weight $\omega_{2}$; the probability ratio of red over white balls is then given by $odds = \omega_{1} / \omega_{2}$. Note that the odds are fixed once and for all during the drawings.
If the balls are taken one by one, the probability (say $p_1$) that the first ball picked is red is equal to the weight fraction of red balls:
\[ p_1= \frac{K w_1}{K w_1 + (MK) w_2} \]In the Wallenius distribution the probability that the second ball picked is red depends on whether the first ball was red or white. If the first ball was red then the above formula is used with $K$ reduced by one. If the first ball was not red then the above formula is used with $MK$ reduced by one. The number of red balls that we get in this experiment is a random variable with Wallenius' noncentral hypergeometric distribution.
The important fact that distinguishes Wallenius' distribution is that there is competition between the balls. The probability that a particular ball is taken in a particular draw depends not only on its own weight, but also on the total weight of the competing balls that remain in the urn at that moment. And the weight of the competing balls depends on the outcomes of all preceding draws. In the Fisher model, the fates of the balls are independent and there is no dependence between draws. One may as well take all $n$ balls at the same time. Each ball has no "knowledge" of what happens to the other balls.
More formally, if the total number $n$ of balls taken is known then the conditional distribution of the number of taken red balls for given $n$ is Fisher's noncentral hypergeometric distribution.
These two distributions have important applications in evolutionary biology and population genetics. If animals of a particular species are competing for a limited food resource so that individual animals are dying one by one until there is enough food for the remaining animals, and if there are different variants of animals with different chances of finding food, then we can expect the animals that die to follow a Wallenius noncentral hypergeometric distribution. Fisherâ€™s noncentral hypergeometric distribution may be used instead of Wallenius distribution in cases where the fates of the individual animals are independent and the total number of survivors is known or controlled as part of a simulation experiment (Fog 2008).
Wallenius distribution is a general model of biased sampling. Fisherâ€™s noncentral hypergeometric distribution is used for statistical tests on contingency tables where the marginals are fixed (McCullagh and Nelder, 1983).
The multivariate Fishers and Wallenius noncentral hypergeometric distribution, are referred to the case where the type of different balls is greater than 2 and each ball has a different probability.
The two distributions are both equal to the (multivariate) hypergeometric distribution when the odds ratio is 1.
Fog, A. (2008), Calculation Methods for Wallenius' Noncentral Hypergeometric Distribution, "Communications in Statistics  Simulation and Computation", Vol. 37, pp. 258273.
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